I've never heard of a graphic card being adversely affected by a regular case fan, so I think you're safe.
Your best bet of course is to install a 120mm fan in both the front and back, pushing air from the front to the back.
Your gpu should have a fan installed that pushes air out the rear socket.
Of course, if you've got more than a couple hdds, I'm always leery about moving air from the front (since the hdds get hot).
If you have a top fan or a side fan, best make those intakes and have the front and back fan outtakes.
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